I posted over at SQ Remote forum, but I did it in the New Features section. I am now realizing that I should raise a ticket, but the fix really only applies to a Beta version of Vera's FW that isn't publicly available yet.
It seems the Lock Button in SQ Remote is toggling state/status from pressing the button, when it should only change status based on what Vera's status of the lock is. MCVrecently fixed this bug with Vera reporting status correctly, essentially Vera was doing the same thing Sq Remote is doing, giving false indication of a locked/unlocked door.